I recently had a server that didn't get added to DNS but was joined to FreeIPA 
system.  I just went backto fix it.  I tried removing the host rebooting and 
re-adding it to the FreeIPA system.  After doing this new DNS records did not 
get added.  I went back to manually add the DNS records (A,SSHFP) and was 
successful however when I try to ssh to the server I get this:
[andrew.meyer@jump01 ~]$ ssh pihole01.loc.example.com
sss_ssh_knownhostsproxy: Could not resolve hostname pihole01.loc.example.com
kex_exchange_identification: Connection closed by remote host
[andrew.meyer@jump01 ~]$ 

But when I try to run a dig against the records added none of the them come 
back.

[andrew.meyer@jump01 ~]$ dig pihole01.loc.example.com 

; <<>> DiG 9.11.4-P2-RedHat-9.11.4-26.P2.el8 <<>> pihole01.loc.example.com
;; global options: +cmd
;; Got answer:
;; ->>HEADER<<- opcode: QUERY, status: NXDOMAIN, id: 2980
;; flags: qr aa rd ra; QUERY: 1, ANSWER: 0, AUTHORITY: 1, ADDITIONAL: 1

;; OPT PSEUDOSECTION:
; EDNS: version: 0, flags:; udp: 4096
; COOKIE: 05879881b6a519f543d896f85ecd7e4235ba486f22821495 (good)
;; QUESTION SECTION:
;pihole01.loc.example.com.      IN      A

;; AUTHORITY SECTION:
loc.example.com.        3600    IN      SOA     freeipa001.loc.example.com. 
hostmaster.loc.example.com. 1590523365 3600 900 1209600 3600

;; Query time: 0 msec
;; SERVER: 10.150.10.12#53(10.150.10.12)
;; WHEN: Tue May 26 15:38:26 CDT 2020
;; MSG SIZE  rcvd: 141

[andrew.meyer@jump01 ~]$

[andrew.meyer@jump01 ~]$ dig pihole01.loc.example.com A

; <<>> DiG 9.11.4-P2-RedHat-9.11.4-26.P2.el8 <<>> pihole01.loc.example.com A
;; global options: +cmd
;; Got answer:
;; ->>HEADER<<- opcode: QUERY, status: NXDOMAIN, id: 24317
;; flags: qr aa rd ra; QUERY: 1, ANSWER: 0, AUTHORITY: 1, ADDITIONAL: 1

;; OPT PSEUDOSECTION:
; EDNS: version: 0, flags:; udp: 4096
; COOKIE: da22b671a9a042aa3acbb8d95ecd71177b0f9a24a87f4651 (good)
;; QUESTION SECTION:
;pihole01.loc.example.com.      IN      A

;; AUTHORITY SECTION:
loc.example.com.        3600    IN      SOA     freeipa001.loc.example.com. 
hostmaster.loc.example.com. 1590520949 3600 900 1209600 3600

;; Query time: 0 msec
;; SERVER: 10.150.10.12#53(10.150.10.12)
;; WHEN: Tue May 26 14:42:15 CDT 2020
;; MSG SIZE  rcvd: 141

[andrew.meyer@jump01 ~]$

Here are the logs from bind on the freeipa server:

26-May-2020 15:27:24.686 validating asm-fedora.example.local/A: bad cache hit 
(local/DS)
26-May-2020 15:27:24.687 broken trust chain resolving 
'asm-fedora.example.local/A/IN': 10.150.10.40#53
26-May-2020 15:27:24.729 no valid RRSIG resolving 'asm-fedora/DS/IN': 
10.150.10.40#53
26-May-2020 15:27:24.729 no valid DS resolving 'asm-fedora/A/IN': 
10.150.10.40#53
26-May-2020 15:28:00.622 validating asm-fedora.example.local/A: bad cache hit 
(local/DS)
26-May-2020 15:28:00.622 broken trust chain resolving 
'asm-fedora.example.local/A/IN': 10.150.10.40#53
26-May-2020 15:28:00.636 validating asm-fedora/A: bad cache hit (asm-fedora/DS)
26-May-2020 15:28:00.636 broken trust chain resolving 'asm-fedora/A/IN': 
10.150.10.40#53
26-May-2020 15:28:03.868 validating asm-fedora.example.local/A: bad cache hit 
(local/DS)
26-May-2020 15:28:03.869 broken trust chain resolving 
'asm-fedora.example.local/A/IN': 10.150.10.40#53
26-May-2020 15:28:03.886 validating asm-fedora/A: bad cache hit (asm-fedora/DS)
26-May-2020 15:28:03.886 broken trust chain resolving 'asm-fedora/A/IN': 
10.150.10.40#53
26-May-2020 15:28:08.154 validating gold-ev-g2.ocsp.swisssign.net/CNAME: no 
valid signature found
26-May-2020 15:28:08.223 validating gold-ev-g2.ocsp.swisssign.net/CNAME: no 
valid signature found
26-May-2020 15:28:08.280 validating ocsp.swisssign.net/A: no valid signature 
found
26-May-2020 15:28:08.349   validating swisssign.net/SOA: no valid signature 
found
26-May-2020 15:28:08.350   validating ocsp.swisssign.net/NSEC: no valid 
signature found
26-May-2020 15:28:11.556 insecurity proof failed resolving 
'incoming.telemetry.mozilla.org/A/IN': 10.150.10.40#53
26-May-2020 15:28:11.556 insecurity proof failed resolving 
'incoming.telemetry.mozilla.org/AAAA/IN': 10.150.10.40#53
26-May-2020 15:28:12.683 insecurity proof failed resolving 
'snippets.cdn.mozilla.net/A/IN': 10.150.10.40#53
26-May-2020 15:28:12.683 insecurity proof failed resolving 
'snippets.cdn.mozilla.net/AAAA/IN': 10.150.10.40#53
26-May-2020 15:28:26.783 validating gold-server-g2.ocsp.swisssign.net/CNAME: no 
valid signature found
26-May-2020 15:28:26.897 validating gold-server-g2.ocsp.swisssign.net/CNAME: no 
valid signature found
26-May-2020 15:28:47.512 insecurity proof failed resolving 
'consent.cookiebot.com/A/IN': 10.150.10.40#53
26-May-2020 15:28:47.512 insecurity proof failed resolving 
'consent.cookiebot.com/AAAA/IN': 10.150.10.40#53
26-May-2020 15:29:45.969 validating vrty.org.example.local/A: bad cache hit 
(local/DS)
26-May-2020 15:29:45.969 broken trust chain resolving 
'vrty.org.example.local/A/IN': 10.150.10.40#53
26-May-2020 15:34:26.510 no valid RRSIG resolving 'local/DS/IN': 10.150.10.40#53
26-May-2020 15:34:26.510 no valid DS resolving 'vrty.org.example.local/A/IN': 
10.150.10.40#53
26-May-2020 15:39:28.026 validating vrty.org.example.local/A: bad cache hit 
(local/DS)
26-May-2020 15:39:28.026 broken trust chain resolving 
'vrty.org.example.local/A/IN': 10.150.10.40#53
26-May-2020 15:40:21.352 validating librenms.example.local/A: bad cache hit 
(local/DS)
26-May-2020 15:40:21.352 broken trust chain resolving 
'librenms.example.local/A/IN': 10.150.10.40#53
26-May-2020 15:40:21.370 validating grocy01.example.local/A: bad cache hit 
(local/DS)
26-May-2020 15:40:21.370 broken trust chain resolving 
'grocy01.example.local/A/IN': 10.150.10.40#53
26-May-2020 15:40:21.392 validating grocy01.example.local/MX: bad cache hit 
(local/DS)
26-May-2020 15:40:21.392 broken trust chain resolving 
'grocy01.example.local/MX/IN': 10.150.10.40#53
26-May-2020 15:40:21.393 validating librenms.example.local/MX: bad cache hit 
(local/DS)
26-May-2020 15:40:21.393 broken trust chain resolving 
'librenms.example.local/MX/IN': 10.150.10.40#53
26-May-2020 15:44:27.810 no valid RRSIG resolving 'local/DS/IN': 10.150.10.40#53
26-May-2020 15:44:27.810 no valid DS resolving 'vrty.org.example.local/A/IN': 
10.150.10.40#53
26-May-2020 15:46:40.756 validating 
pihole01.loc.example.com.example.local/AAAA: bad cache hit (local/DS)
26-May-2020 15:46:40.756 broken trust chain resolving 
'pihole01.loc.example.com.example.local/AAAA/IN': 10.150.10.40#53
26-May-2020 15:46:40.760 validating pihole01.loc.example.com.example.local/A: 
bad cache hit (local/DS)
26-May-2020 15:46:40.760 broken trust chain resolving 
'pihole01.loc.example.com.example.local/A/IN': 10.150.10.40#53
26-May-2020 15:48:52.134 insecurity proof failed resolving 
'collection-endpoint-prod.herokuapp.com/A/IN': 10.150.10.40#53
26-May-2020 15:49:31.721 validating vrty.org.example.local/A: bad cache hit 
(local/DS)
26-May-2020 15:49:31.721 broken trust chain resolving 
'vrty.org.example.local/A/IN': 10.150.10.40#53
[root@freeipa001 data]# 
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