An update: The journalctl command has some really interesting output:

Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: WARNING:  Symbolic link 
'/var/lib/pki/pki-tomcat/alias' does NOT exist!
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: INFO:  Attempting to create 
'/var/lib/pki/pki-tomcat/alias' -> '/etc/pki/pki-tomcat/aliJun 10 11:16:23 
ipa.example.com pkidaemon[25032]: ln: failed to create symbolic link 
‘/var/lib/pki/pki-tomcat/alias’: Permission denied
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: ERROR:  Failed to create 
'/var/lib/pki/pki-tomcat/alias' -> '/etc/pki/pki-tomcat/alias'Jun 10 11:16:23 
ipa.example.com pkidaemon[25032]: WARNING:  Symbolic link 
'/var/lib/pki/pki-tomcat/logs' does NOT exist!
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: INFO:  Attempting to create 
'/var/lib/pki/pki-tomcat/logs' -> '/var/log/pki/pki-tomcat'Jun 10 11:16:23 
ipa.example.com pkidaemon[25032]: ln: failed to create symbolic link 
‘/var/lib/pki/pki-tomcat/logs’: Permission denied
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: ERROR:  Failed to create 
'/var/lib/pki/pki-tomcat/logs' -> '/var/log/pki/pki-tomcat'!
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: WARNING:  Symbolic link 
'/var/lib/pki/pki-tomcat/bin' does NOT exist!
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: INFO:  Attempting to create 
'/var/lib/pki/pki-tomcat/bin' -> '/usr/share/tomcat/bin' . Jun 10 11:16:23 
ipa.example.com pkidaemon[25032]: ln: failed to create symbolic link 
‘/var/lib/pki/pki-tomcat/bin’: Permission denied
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: ERROR:  Failed to create 
'/var/lib/pki/pki-tomcat/bin' -> '/usr/share/tomcat/bin'!
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: WARNING:  Symbolic link 
'/var/lib/pki/pki-tomcat/conf' does NOT exist!
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: INFO:  Attempting to create 
'/var/lib/pki/pki-tomcat/conf' -> '/etc/pki/pki-tomcat' . .Jun 10 11:16:23 
ipa.example.com pkidaemon[25032]: ln: failed to create symbolic link 
‘/var/lib/pki/pki-tomcat/conf’: Permission denied
Jun 10 11:16:23 ipa.example.com pkidaemon[25032]: ERROR:  Failed to create 
'/var/lib/pki/pki-tomcat/conf' -> '/etc/pki/pki-tomcat'!
Jun 10 11:16:23 ipa.example.com systemd[1]: pki-tomcatd@pki-tomcat.service: 
control process exited, code=exited status=1
Jun 10 11:16:23 ipa.example.com systemd[1]: Failed to start PKI Tomcat Server 
pki-tomcat.

Which makes me think All we have to do is create the right directory 
structures/links and/or change the file permissions? But which ones and to whom?

—Dan

[cid:image001.jpg@01D1C30A.B174B4C0]<http://www.high5games.com/>
Daniel Alex Finkelstein| Lead Dev Ops Engineer
dan.finkelst...@h5g.com<mailto:dan.finkelst...@h5g.com> | 212.604.3447
One World Trade Center, New York, NY 10007
www.high5games.com<http://www.high5games.com/>
Play High 5 Casino<https://apps.facebook.com/highfivecasino/> and Shake the 
Sky<https://apps.facebook.com/shakethesky/>
Follow us on: Facebook<http://www.facebook.com/high5games>, 
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From: <freeipa-users-boun...@redhat.com> on behalf of Daniel Finkestein 
<dan.finkelst...@high5games.com>
Date: Wednesday, June 8, 2016 at 17:11
To: "freeipa-users@redhat.com" <freeipa-users@redhat.com>
Subject: [Freeipa-users] FreeIPA 4.2.0: An error has occurred (IPA Error 4301: 
CertificateOperationError)

I have a promoted CA master/FreeIPA 4.2.0 instance on CentOS 7 that emits this 
error in the httpd logs whenever the WebUI tries to see the certificates page:

[Wed Jun 08 16:56:27.052106 2016] [:error] [pid 2863] ipa: ERROR: 
ipaserver.plugins.dogtag.ra.find(): Unable to communicate with CMS ([Errno 111] 
Connection refused)
[Wed Jun 08 16:56:27.052401 2016] [:error] [pid 2863] ipa: INFO: 
[jsonserver_session] dfinkelst...@example.com: cert_find(version=u'2.156'): 
CertificateOperationError

The certificates appear as follows:

[root@ipa httpd]# certutil -L -d /etc/httpd/alias/

Certificate Nickname                                         Trust Attributes
                                                             SSL,S/MIME,JAR/XPI

Server-Cert                                                  u,u,u
auditSigningCert cert-pki-ca                                 u,u,u
EXAMPLE.COM IPA CA                                             CTu,u,Cu
ipaCert                                                      u,u,u
ocspSigningCert cert-pki-ca                                  u,u,u
subsystemCert cert-pki-ca                                    u,u,u

Upon reboot, httpd fails to start with the error: Failed to start Identity, 
Policy, Audit. But it can be started later with `ipactl restart`. Finally, the 
two last IPA services don't appear to start:

[root@ipa]# ipactl status
Directory Service: RUNNING
krb5kdc Service: RUNNING
kadmin Service: RUNNING
named Service: RUNNING
ipa_memcached Service: RUNNING
httpd Service: RUNNING
pki-tomcatd Service: RUNNING
ipa-otpd Service: STOPPED
ipa-dnskeysyncd Service: STOPPED
ipa: INFO: The ipactl command was successful

I'd appreciate any guidance or suggestions.

Thanks,
Dan


[cid:image002.jpg@01D1C30A.B174B4C0]<http://www.high5games.com/>
Daniel Alex Finkelstein| Senior Dev Ops Engineer
dan.finkelst...@h5g.com<mailto:dan.finkelst...@h5g.com> | 212.604.3447
One World Trade Center, New York, NY 10007
www.high5games.com<http://www.high5games.com/>
Play High 5 Casino<https://apps.facebook.com/highfivecasino/> and Shake the 
Sky<https://apps.facebook.com/shakethesky/>
Follow us on: Facebook<http://www.facebook.com/high5games>, 
Twitter<https://twitter.com/High5Games>, 
YouTube<http://www.youtube.com/High5Games>, 
Linkedin<http://www.linkedin.com/company/1072533?trk=tyah>

This message and any attachments may contain confidential or privileged 
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If you are not the intended recipient, please notify the sender by return 
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attachments. Any unauthorized disclosure, use, distribution, or reproduction of 
this message or any attachments is prohibited and may be unlawful.
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