Hi

is there an optimal way to project labels into cortex for a single individual? I've been using mri_label2label, but it seems a bit strange to be moving back and forth from the registered sphere when you're just dealing with the same person (e.g., using -srcsubject and -trgsubject ....) Also, when I do this, the label actually moves away from the white/gray boundary, rather than extending from white through cortex (maybe I'm doing something dumb - command is below). Finally, what is the best way of saving these into a volume? I've been using mri_vol2roi, but wasn't sure if there's something new and exciting out there.

I'd thought that this had been covered before by Doug G., but can't find the messages, sorry!

thanks a lot,

Fred

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mri_label2label --srclabel [label] --srcsubject [sub] --trgsubject [sub] --trglabel [thicklabel] --projfrac .5 --regmethod surf -hemi lh


mri_vol2roi --srcvol [f] --srcreg [register.dat] --label [thicklabel] --finalmskvol [thickmask] --roiavg [whatever] --labelfillthresh .5 --mskthresh .5

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