Hi Bruce, I tried including -make all and it gave me this: "ERROR: Flag -make unrecognized."
-Jonathan Jonathan Winkle McGovern Institute for Brain Research Massachusetts Institute of Technology 617-324-5265 On 4/23/2010 12:43 PM, Bruce Fischl wrote: > Hi Jonathan, > > can you try running recon-all with -make all? > > cheers > Bruce > On Thu, 22 Apr 2010, Jonathan Winkle wrote: > >> Hey Mailing List, >> >> I'm getting the following error in the smooth2 stage of >> reconstruction: >> >> #-------------------------------------------- >> #...@# Smooth2 lh Wed Apr 21 17:22:08 EDT 2010 >> >> mris_smooth -n 3 -nw ../surf/lh.white ../surf/lh.smoothwm >> >> /mindhive/desimonelab/structurals/monkeys/muli/scripts >> smoothing for 3 iterations >> MRISread(../surf/lh.white): could not open file >> No such file or directory >> mris_smooth: could not read surface file ../surf/lh.white >> No such file or directory >> Linux ba2 2.6.31-20-generic #57-Ubuntu SMP Mon Feb 8 09:02:26 UTC 2010 >> x86_64 GNU/Linux >> >> recon-all exited with ERRORS at Wed Apr 21 17:22:08 EDT 2010 >> ----------------------------------------------- >> >> The lh.white file has not been created yet, so I'm not sure why it's >> trying to access it. Any help would be much appreciated. Thanks! >> >> -Jonathan >> >> > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
