I have a short question about the additional T2 scan as well.
If I perform the full recon-all;
recon-all -s mySubject -i myT1.nii -T2 myT2.nii -T2pial -all
do I still have to precise myT2scan.nii.gz T2 for using the t2 for the
hippocampal subfields as well ? or it will automatically take the t2
precised for the t2pial ?
On Mon, Sep 5, 2016 at 4:13 PM, Iglesias, Eugenio <e.igles...@ucl.ac.uk>
> The same one; just change the input file and the analysis ID
> - T2: recon-all -s mySubject -hippocampal-subfields-T1T2
> myT2scan.nii.gz T2
> - FLAIR: recon-all -s mySubject -hippocampal-subfields-T1T2
> myFLAIRscan.nii.gz FLAIR
> Juan Eugenio Iglesias
> Senior Research Fellow
> Translational Imaging Group
> University College London
> On 5 Sep 2016, at 15:10, Vaz pandolfo, Renata <r...@njit.edu> wrote:
> Dear FS experts,
> I have a question about the "segmentation with an additional scan -
> multispectral segmentation"
> on the hippocampal sf segmentation, FS dev. 6.0.
> For controls on which I had already run recon-all -all, I added the T2
> sequence with the following
> recon-all -s <subject_name> \
> -hippocampal-subfields-T1T2 <file name of additional scan> <analysisID>
> Now, if I want to do the same thing with FLAIR as the additional input, which
> flag should I use?
> Thank you,
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