ok thanks.

Cheers,
Pierre

On Mon, Sep 19, 2016 at 3:17 PM, Iglesias Gonzalez, Eugenio <
e.igles...@ucl.ac.uk> wrote:

> Yes, you have so specify it separately.
> Cheers,
> /Eugenio
>
>
> Juan Eugenio Iglesias
> Senior Research Fellow
> Translational Imaging Group
> University College London
> http://www.jeiglesias.com
> http://cmictig.cs.ucl.ac.uk/
>
>
> On 19 Sep 2016, at 14:13, pierre deman <deman.pie...@gmail.com> wrote:
>
> Hi,
>
> I have a short question about the additional T2 scan as well.
>
> If I perform the full recon-all;
> recon-all -s mySubject -i myT1.nii -T2 myT2.nii -T2pial -all
> -hippocampal-subfields-T1T2
> do I still have to precise myT2scan.nii.gz T2 for using the t2 for the
> hippocampal subfields as well ? or it will automatically take the t2
> precised for the t2pial ?
>
> Cheers,
> Pierre
>
> On Mon, Sep 5, 2016 at 4:13 PM, Iglesias, Eugenio <e.igles...@ucl.ac.uk>
> wrote:
>
>> The same one; just change the input file and the analysis ID
>>
>> - T2:       recon-all -s mySubject -hippocampal-subfields-T1T2
>> myT2scan.nii.gz  T2
>>
>> - FLAIR: recon-all -s mySubject -hippocampal-subfields-T1T2
>> myFLAIRscan.nii.gz  FLAIR
>>
>> Cheers,
>>
>> /Eugenio
>>
>> Juan Eugenio Iglesias
>> Senior Research Fellow
>> Translational Imaging Group
>> University College London
>> http://www.jeiglesias.com
>> http://cmictig.cs.ucl.ac.uk/
>>
>>
>> On 5 Sep 2016, at 15:10, Vaz pandolfo, Renata <r...@njit.edu> wrote:
>>
>> Dear FS experts,
>>
>> I have a question about the "segmentation with an additional scan - 
>> multispectral segmentation"
>> on the hippocampal sf segmentation, FS dev. 6.0.
>>
>> For controls on which I had already run recon-all -all, I added the T2 
>> sequence with the following
>> command:
>>
>>
>> recon-all -s <subject_name> \
>> -hippocampal-subfields-T1T2 <file name of additional scan> <analysisID>
>>
>> Now, if I want to do the same thing with FLAIR as the additional input, 
>> which flag should I use?
>>
>> Thank you,
>>
>> Renata
>>
>>
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> The information in this e-mail is intended only for the person to whom it
>> is
>> addressed. If you believe this e-mail was sent to you in error and the
>> e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you
>> in error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>>
>>
>
>
> --
> DEMAN Pierre
> Mobile : +33 7 82 57 80 94
>
>
>


-- 
DEMAN Pierre
Mobile : +33 7 82 57 80 94
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Reply via email to