What version of perl are you using? $> perl --version
If its perl 5.20 (or maybe 5.22) than the error you are encountering is because because that version of perl is incompatible with the MNI tools shipped with the version of freesurfer you are using. The easiest way to remedy the situation is to download and install the development version of freesurfer which fixes this issue and will be included in the upcoming 6.0 release (see "Development Version"): https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall -Zeke On 10/17/2016 12:32 PM, Qinggang Yu wrote: > Hello FreeSurfer Developers, > > I was trying to run recon-all -all, and it failed roughly 30s after it > started running, with the error message being: recon-all -s bert exited > with errors. > > Freesurfer version: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0 > Platform: Red Hat Enterprise Linux Client Release 5.2 > uname -a: Linux schizo.psych.med.umich.edu > <http://schizo.psych.med.umich.edu> 2.6.18-92.1.13.el5 #1 SMP Wed Sep 24 > 19:32:05 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux > recon-all.log: see attached > > Please let me know how I can fix this. Thank you very much! > > Best, > Qinggang > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
