Thanks for your reply! The issue has been resolved - it was the temp folder
on the system running out of space. But thank you very much for your
On Tue, Oct 18, 2016 at 10:07 AM, Z K <zkauf...@nmr.mgh.harvard.edu> wrote:
> What version of perl are you using?
> $> perl --version
> If its perl 5.20 (or maybe 5.22) than the error you are encountering is
> because because that version of perl is incompatible with the MNI tools
> shipped with the version of freesurfer you are using.
> The easiest way to remedy the situation is to download and install the
> development version of freesurfer which fixes this issue and will be
> included in the upcoming 6.0 release (see "Development Version"):
> On 10/17/2016 12:32 PM, Qinggang Yu wrote:
> > Hello FreeSurfer Developers,
> > I was trying to run recon-all -all, and it failed roughly 30s after it
> > started running, with the error message being: recon-all -s bert exited
> > with errors.
> > Freesurfer version: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
> > Platform: Red Hat Enterprise Linux Client Release 5.2
> > uname -a: Linux schizo.psych.med.umich.edu
> > <http://schizo.psych.med.umich.edu> 2.6.18-92.1.13.el5 #1 SMP Wed Sep 24
> > 19:32:05 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux
> > recon-all.log: see attached
> > Please let me know how I can fix this. Thank you very much!
> > Best,
> > Qinggang
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