Hello all,

I recon-all'd ~40 different subjects. I have been going through all the
images to make sure they were processed correctly. Most required no no
editing and recon-all did a very good job.

But for one scan in particular, it looks like Freesurfer thinks the top
of the spinal cord is the brain. Several vertebrae are very nicely
segmented... :P

Just wondering if you have any suggestions for reprocessing this
subject? The error is reproducible with default recon-all settings.

Subject has some pathology in the white matter which might be causing
the problem?

Screenshot of T1.mgz + lh.pial at the following link:


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