It is hard to say from those pics what is wrong as you need to look at
the ?h.orig.nofix surface on the scans. It looks like there is a lot of
skull left there, so it may be that the surface is extending out to the
skull. I don't think it is a problem with the ventricles.
On 2/26/17 6:58 AM, Shane Schofield wrote:
Hi Freesurfer Team
Following up on my previous email, I have terminated the recon-all as
they were was still running after 3 days. As has been noted on other
threads here, I checked the wm.mgz and they all look quite bad
(screenshots attached). Is this the most probable source of the XL
defect?
In xl_defect 1 and 2, should I be filling in the ventricles?
Please let me know what I could do to save these scans! Thank you.
Best Wishes,
Shane
On 24 February 2017 at 16:21:37, Shane Schofield
(shane.schofi...@yahoo.com <mailto:shane.schofi...@yahoo.com>) wrote:
Hi Freesurfer Team,
I am running recon-all on Freesurfer version 6. A few of my subjects
have “XL defect detected …” and their recon-all have been running for
more than 20 hours. I hope this is not a silly question, but will
this XL defect be corrected eventually…?
Another question, what are “defects”? Is there anything I could do to
the raw T1 before recon-all?
Thanks!
Shane
--
Shane Schofield
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