It is failing the tal registration check. Does the registration look ok? If so, then run with -no-talcheck.
On 08/09/2017 02:24 PM, Yagmur Ozdemir 19 wrote: > Hello FreeSurfer experts, > > I have been running into a consistent problem of Talairach alignment > error in my recon-all for some of my subjects, even though I was able > to get a completed recon-all for other subjects by using the same > procedure to obtain my nifti files. I have attached the recon-all logs > of a successful and a Talairach failed subject respectively, and as I > try to understand the difference, in the successful one this was tried > the last: INFO: Trying MINC mritotal to perform Talairach align... > then failed, then there is a "New invocation of recon-all " which > succeeded. I do not think I made that invocation. Could someone help > me figure out what I am missing, and how can I make recon-all continue > as I somehow did previously? > > Thank you so much! > Idil > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
