It is failing the tal registration check. Does the registration look ok? 
If so, then run with -no-talcheck.

On 08/09/2017 02:24 PM, Yagmur Ozdemir 19 wrote:
> Hello FreeSurfer experts,
> I have been running into a consistent problem of Talairach alignment 
> error in my recon-all for some of my subjects, even though I was able 
> to get a completed recon-all for other subjects by using the same 
> procedure to obtain my nifti files. I have attached the recon-all logs 
> of a successful and a Talairach failed subject respectively, and as I 
> try to understand the difference, in the successful one this was tried 
> the last: INFO: Trying MINC mritotal to perform Talairach align... 
> then failed, then there is a "New invocation of recon-all " which 
> succeeded. I do not think I made that invocation. Could someone help 
> me figure out what I am missing, and how can I make recon-all continue 
> as I somehow did previously?
> Thank you so much!
> Idil
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> Freesurfer mailing list

Douglas N. Greve, Ph.D.
MGH-NMR Center
Phone Number: 617-724-2358
Fax: 617-726-7422


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