It is failing the tal registration check. Does the registration look ok?
If so, then run with -no-talcheck.
On 08/09/2017 02:24 PM, Yagmur Ozdemir 19 wrote:
> Hello FreeSurfer experts,
> I have been running into a consistent problem of Talairach alignment
> error in my recon-all for some of my subjects, even though I was able
> to get a completed recon-all for other subjects by using the same
> procedure to obtain my nifti files. I have attached the recon-all logs
> of a successful and a Talairach failed subject respectively, and as I
> try to understand the difference, in the successful one this was tried
> the last: INFO: Trying MINC mritotal to perform Talairach align...
> then failed, then there is a "New invocation of recon-all " which
> succeeded. I do not think I made that invocation. Could someone help
> me figure out what I am missing, and how can I make recon-all continue
> as I somehow did previously?
> Thank you so much!
> Freesurfer mailing list
Douglas N. Greve, Ph.D.
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