I had problems with skullstriping. I ran recon-all and part of the skull is
being considered as cortex in the segmentation. I tried to fix this using:
*recon-all -skullstrip -wsthresh 50 -clean-bm -subjid <subject name>*
*recon-all -autorecon-pial -subjid <subject name>*
But nothing changed.
Do I need to run recon-all all over?
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