I am using the command
mri_convert -at transforms/talairach.xfm brain.mgz brain_in_tal.nii.gz
to convert a native-space skull-stripped T1 image to talairach space. I used
recon-all to generate the transform matrix, and the segmentation and everything
look good. But the T1_in_talairach image is not good - the brains are ending up
different sizes, and frequently have the posterior chopped off.
Please what am I doing wrong? Should I be applying the inverse of the
Helen Beaumont PhD
University of Manchester
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