Dear FreeSurfer Experts,

     I’m recently getting an error in make_average_subject and can’t find
     the reason.

     Please see the following for the error log from recon-all.log:

 mri_aparc2aseg --s avgsubject1 --volmask --aseg aseg.presurf.hypos --relabel 
mri/norm.mgz mri/transforms/talairach.m3z 

relabeling unlikely voxels interior to white matter surface:
        norm: mri/norm.mgz
         XFORM: mri/transforms/talairach.m3z
        GCA: /home/lakshman/freesurfer/average/RB_all_2016-05-10.vc700.gca
        label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
SUBJECTS_DIR /home/lakshman/freesurfer/subjects
subject avgsubject1
outvol /home/lakshman/freesurfer/subjects/avgsubject1/mri/aparc+aseg.mgz
useribbon 0
baseoffset 0
RipUnknown 0

Reading lh white surface

Reading lh pial surface

Loading lh annotations from 
reading colortable from annotation file...
colortable with 36 entries read (originally 

Reading rh white surface

Reading rh pial surface

Loading rh annotations from 
reading colortable from annotation file...
colortable with 36 entries read (originally 
Have color table for lh white annotation
Have color table for rh white annotation
Loading ribbon segmentation from 

Building hash of lh white

Building hash of lh pial

Building hash of rh white

Building hash of rh pial

Loading aseg from 
ASeg Vox2RAS: -----------
-1.00000   0.00000   0.00000   128.00000;
 0.00000   0.00000   1.00000  -128.00000;
 0.00000  -1.00000   0.00000   128.00000;
 0.00000   0.00000   0.00000   1.00000;
mghRead(mri/norm.mgz, -1): could not open file

Labeling Slice
relabeling unlikely voxels in interior of white matter
mri/norm.mgz: could not load norm volume from

Could you please help us in resolving the issue.

Have also attached the recon-all log for reference.

Thanks & Regards,

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Attachment: recon-all.log
Description: recon-all.log

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