check the output of the skull stripping. This error usually means that too
much (everything?) has been erased and no plausible cc could be found
On Thu, 1 Mar 2018, Matthew Grecsek wrote:
My recon-all ended prematurely with the following message:
final transformation (x=136.0, yr=-10.054, zr=-0.114):
0.98464 0.00200 -0.17457 15.51372;
-0.00197 1.00000 0.00035 17.22442;
0.17457 0.00000 0.98464 -17.83761;
0.00000 0.00000 0.00000 1.00000;
mri_cc: no WM voxels found with norm > 40 -- check skull stripping
No such file or directory
Linux centos-7-1 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018
x86_64 x86_64 x86_64 GNU/Linux
recon-all -s matt2 exited with ERRORS at Thu Mar 1 04:35:09 UTC 2018
I am running: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
My full log file is attached.
Please let me know suggestions for correcting and continuing the process.
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