Hi Matt

check the output of the skull stripping. This error usually means that too much (everything?) has been erased and no plausible cc could be found


On Thu, 1 Mar 2018, Matthew Grecsek wrote:

My recon-all ended prematurely with the following message:  

final transformation (x=136.0, yr=-10.054, zr=-0.114):
 0.98464   0.00200  -0.17457   15.51372;
-0.00197   1.00000   0.00035   17.22442;
 0.17457   0.00000   0.98464  -17.83761;
 0.00000   0.00000   0.00000   1.00000;
mri_cc: no WM voxels found with norm > 40 -- check skull stripping

No such file or directory
Linux centos-7-1 3.10.0-693.17.1.el7.x86_64 #1 SMP Thu Jan 25 20:13:58 UTC 2018 
x86_64 x86_64 x86_64 GNU/Linux

recon-all -s matt2 exited with ERRORS at Thu Mar  1 04:35:09 UTC 2018

I am running:  freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c

My full log file is attached. 

Please let me know suggestions for correcting and continuing the process.



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