Hi, I'm running tracula and having some issues.
Using FS5.3, I have run successfully (without errors) 'recon-all -all', then 'trac-all -prep -c dmrirc'. I then get an error (below) running 'trac-all -bep -c dmrirc'. The 'dmri' directory is generated from the -prop step above. [jimalex@login01 freesurfer]$ trac-all -bedp -c dmrirc INFO: SUBJECTS_DIR is /scratch/jimalex/freesurfer INFO: Diffusion root is /scratch/jimalex/freesurfer Actual FREESURFER_HOME /act/freesurfer-5.3.0-HCP INFO: FreeSurfer build stamps do not match Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0-HCP INFO: current FREESURFER_HOME does not match that of previous processing. Current: /act/freesurfer-5.3.0-HCP Previous: /data/gizmo/data1/freesurfer5.3 WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /scratch/jimalex/freesurfer/neo321e_chpc/dmri subjectdir is /scratch/jimalex/freesurfer/neo321e_chpc/dmri /scratch/jimalex/freesurfer/neo321e_chpc/dmri/data not found [jimalex@login01 freesurfer]$ ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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