During the last lectures of the recent 4/2-5 course, Dr. Fischl referenced code 
that would properly segment/parcellate sub-par images. If we don't have a good 
3D MPRAGE or SPGR T1 image, is there a specific command I need to use for these 
alternate/sub-par inputs into recon-all ? If not, when might this code be 
available? I'm looking at archival images and often only a sagittal T1 volume 
is available. Also, can I just change this to 1mm voxels and leave it as a 
sagittal for recon-all, or should I reformat as axials first?

Great course, by the way.



John R. Absher, MD, FAAN
GHS Neurosciences
864-350-6655 (mobile)

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