I probably shouldn’t say this too loud but, after many delays, I might be close 
to having a working atlas of the thalamic nuclei that I would like to release 
in FreeSurfer. Hopefully in a couple of months…

--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/


From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Yash Patel 
<ypa...@research.baycrest.org>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, 16 April 2018 at 20:57
To: freesurfer <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Lateral Geniculate Nucleus (LGN) roi or volume measures?

Hi all,

Is there any way to obtain (automatically, n~1000 subjects), LGN volumes from 
the Freesurfer set of tools?
Or somehow transform the ROI from an atlas into subject space, then extract 
volume data?

Thanks,
Yash
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