When you ran mkanalysis-sess, did you specify two event types? You only have one non-null event in your paradigm file.
On 10/28/2018 08:57 AM, Francesca Strappini wrote: > > External Email - Use Caution > > Thanks! Now it's loading correctly my event file. > However, when I run selxavg3-sess I get this error message: > > selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF -no-con-ok > > outanadir = > /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF/bold/FF-MonkeyCassis.sm03.lh > Excluding 2 points > Excluding 2 points > Excluding 2 points > Excluding 2 points > Excluding 2 points > Excluding 2 points > Excluding 2 points > Excluding 2 points > Excluding 2 points > Excluding 2 points > parfiles condition id list: 1 > ERROR: found 1 non-null conditions, expected 2 > ------------------------------------------ > ERROR: fast_selxavg3() failed\n > > This is my even file: > > 0 1 32 1 ON > 32 0 32 1 OFF > 64 1 32 1 ON > 96 0 32 1 OFF > 128 1 32 1 ON > 160 0 32 1 OFF > 192 1 32 1 ON > 224 0 32 1 OFF > > Thanks for the help! > Best > Francesca > > Il giorno gio 3 mag 2018 alle ore 00:49 Douglas N. Greve > <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> ha scritto: > > oops, sorry. Looks like it is having a problem loading your paradigm > file. Check that. If the error does not pop out to you then send > it to me. > > > On 05/02/2018 10:06 AM, Francesca Strappini wrote: > > Hi, sorry, maybe my last email got lost. Is there anything I can > try > > to fix this problem with selxavg3-sess? > > > > Thanks! > > Best > > Francesca > > > > 2018-04-24 20:35 GMT+03:00 Francesca Strappini > > <francescastrapp...@gmail.com > <mailto:francescastrapp...@gmail.com> > <mailto:francescastrapp...@gmail.com > <mailto:francescastrapp...@gmail.com>>>: > > > > Thank you for the reply! > > I deleted the contrasts and run this command line: > > > > selxavg3-sess -a FF-MonkeyCassis.sm03.rh -s MonkeyCassis-FF > -no-con-ok > > > > > > ------- matlab output -------------------- > > MATLAB is selecting SOFTWARE OPENGL rendering. > > > > < M A T L A B (R) > > > Copyright 1984-2016 The MathWorks, Inc. > > R2016b (9.1.0.441655) 64-bit (glnxa64) > > September 7, 2016 > > > > > > To get started, type one of these: helpwin, helpdesk, or demo. > > For product information, visit www.mathworks.com > <http://www.mathworks.com> > > <http://www.mathworks.com>. > > > > >> >> >> >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > > >> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > > >> /usr/local/freesurfer/matlab/MRIread.m > > >> >> >> starting fast_selxavg3b > > > > > > #@# MonkeyCassis-FF ############################### > > /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF > > ------------------------- > > $Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $ > > ------------------------- > > outtop = /usr/local/freesurfer/fsfast/Monkeys > > Extension format = nii.gz > > INFO: key nSliceGroups unrecognized, line 11, skipping > > Subscripted assignment dimension mismatch. > > > > Error in fast_ldpar4 (line 97) > > par4(nthrow,1) = tonset; > > > > Error in flac_customize (line 121) > > [par partype] = fast_ldpar4(parpath); > > > > Error in fast_selxavg3b (line 129) > > flac0 = flac_customize(flac0); > > > > >> ------------------------------------------ > > ERROR: fast_selxavg3() failed\n > > > > > > 2018-04-24 20:27 GMT+03:00 Douglas Greve > <dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu> > > <mailto:dgr...@mgh.harvard.edu > <mailto:dgr...@mgh.harvard.edu>>>: > > > > Try deleting the contrasts (.mat files) and rerunning > > > > > > On 4/24/18 5:48 AM, Francesca Strappini wrote: > >> > >> > >> Dear FreeSurfer experts, > >> > >> I'm trying to analyze some monkey functional data. I > got this > >> error message with selxavg3-sess. > >> > >> I run the following commands: > >> > >> mkcontrast-sess -analysis FF-MonkeyCassis.sm03.lh -contrast > >> ON-vs-OFF -a 1 -c 0 > >> mkcontrast-sess -analysis FF-MonkeyCassis.sm03.rh -contrast > >> ON-vs-OFF -a 1 -c 0 > >> preproc-sess -surface MonkeyCassis lhrh -fwhm 3 -s > >> MonkeyCassis-FF -fsd bold -per-session > >> selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF > >> > >> > >> ------- matlab output -------------------- > >> MATLAB is selecting SOFTWARE OPENGL rendering. > >> > >> < M A T L A B (R) > > >> Copyright 1984-2016 The MathWorks, Inc. > >> R2016b (9.1.0.441655) 64-bit (glnxa64) > >> September 7, 2016 > >> > >> > >> To get started, type one of these: helpwin, helpdesk, > or demo. > >> For product information, visit www.mathworks.com > <http://www.mathworks.com> > >> <http://www.mathworks.com>. > >> > >> >> >> >> >> > /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > >> >> /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > >> >> /usr/local/freesurfer/matlab/MRIread.m > >> >> >> >> starting fast_selxavg3b > >> > >> > >> #@# MonkeyCassis-FF ############################### > >> /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF > >> ------------------------- > >> $Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $ > >> ------------------------- > >> outtop = /usr/local/freesurfer/fsfast/Monkeys > >> Extension format = nii.gz > >> INFO: key nSliceGroups unrecognized, line 11, skipping > >> 1 ON-vs-OFF.mat > >> Subscripted assignment dimension mismatch. > >> > >> Error in fast_ldpar4 (line 97) > >> par4(nthrow,1) = tonset; > >> > >> Error in flac_customize (line 121) > >> [par partype] = fast_ldpar4(parpath); > >> > >> Error in fast_selxavg3b (line 129) > >> flac0 = flac_customize(flac0); > >> > >> >> ------------------------------------------ > >> ERROR: fast_selxavg3() failed\n > >> > >> Thank you! > >> Best > >> > >> Francesca > >> > >> -- > >> Francesca Strappini, Ph.D. > >> Neurobiology Department > >> Weizmann Institute of Science > >> 234 Herzl Street, Rehovot 7610001 Israel > >> Tel.: +972 58 444 2584 > >> E-mail: francesca.strapp...@weizmann.ac.il > <mailto:francesca.strapp...@weizmann.ac.il> > >> <mailto:francesca.strapp...@weizmann.ac.il > <mailto:francesca.strapp...@weizmann.ac.il>> > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > <mailto:Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > > The information in this e-mail is intended only for the > person > > to whom it is > > addressed. If you believe this e-mail was sent to you in > error > > and the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline > > <http://www.partners.org/complianceline> . If the e-mail was > > sent to you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > -- > > Francesca Strappini, Ph.D. > > Neurobiology Department > > Weizmann Institute of Science > > 234 Herzl Street, Rehovot 7610001 Israel > > Tel.: +972 58 444 2584 > > E-mail: francesca.strapp...@weizmann.ac.il > <mailto:francesca.strapp...@weizmann.ac.il> > > <mailto:francesca.strapp...@weizmann.ac.il > <mailto:francesca.strapp...@weizmann.ac.il>> > > > > > > > > > > -- > > Francesca Strappini, Ph.D. > > Neurobiology Department > > Weizmann Institute of Science > > 234 Herzl Street, Rehovot 7610001 Israel > > Tel.: +972 58 444 2584 > > E-mail: francesca.strapp...@weizmann.ac.il > <mailto:francesca.strapp...@weizmann.ac.il> > > <mailto:francesca.strapp...@weizmann.ac.il > <mailto:francesca.strapp...@weizmann.ac.il>> > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > Francesca Strappini, Ph.D. > Neurobiology Department > Weizmann Institute of Science > 234 Herzl Street, Rehovot 7610001 Israel > Tel.: +972 58 444 2584 > E-mail: francesca.strapp...@weizmann.ac.il > <mailto:francesca.strapp...@weizmann.ac.il> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
