External Email - Use Caution Dear FreeSurfer team,
In order to improve the skull stripping for some of the participants of the sample, I replaced the brainmask.mgz generated in FreeSurfer by the betted image generated from FSL, and I run recon-all again. The problem is that, again, FreeSurfer generated again another brainmask without saving my brainmask and now, I have, again, a bad skull stripped image. Any help with this would be greatly appreciated. Best regards, Rosalia
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