Sorry, fsplam is only for surfaces.

On 9/2/2019 7:46 PM, Harikumar, Amritha wrote:
> Hi there,
> I am trying to run a Permutation Analysis of Linear Models (PALM) for 
> analyzing subcortical areas in the nucleus accumbens, caudate, and putamen. 
> Upon trying to run the script after reading the Freesurfer wiki, I am not 
> sure what it is referring to regarding applying fsPalm in MATLAB. My 
> questions are - do we a.) copy paste the existing fspalm command in Matlab 
> and run it after setting the two Freesurfer paths listed in the wiki, or what 
> is the correct procedure to run it? I tried running it in terminal as well, 
> but didn’t have any luck. My existing Matlab script has set up the two 
> Freesurfer paths, and is trying to run the fsPalm command for each 
> subcortical area of the three ROIs mentioned above, but that isn’t working 
> either. Any help in running fsPalm would be greatly appreciated!
> Thanks,
> Amritha
> Amritha Harikumar
> Clinical Research Coordinator
> Holt Emotion and Social Neuroscience Lab
> Department of Psychiatric Neuroimaging
> Martinos Center for Biomedical Imaging
> Massachusetts General Hospital
> ___________________________
> 149 13th Street, Rm 2620A
> Charlestown, MA 02129
> Phone: 617-724-3283
> _______________________________________________
> Freesurfer mailing list

Freesurfer mailing list

Reply via email to