hmmm. Can you try *only* loading the conformed image and seeing how it
looks? freeview will use one of the images as the basis for it's display
coordinates, which can cause apparent slicing artifacts that are only
display issues for other volumes.
On Tue, 3 Sep 2019, Rovai Antonin wrote:
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I have the following issue when running mri_convert. When using the option
-conform option (as in the reconall pipeline), the sag slices seems to be
shifted at some point (see attached pictures). What is happening?
By the way the option description is not super clear, could you please give
some extra details?
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