Hi Gwang-Won

try mri_mask

cheers
Bruce
On Fri, 6 Sep 2019, Gwang-Won Kim wrote:


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Hi there,
 
I would like to show activation map in the thalamus, caudate nucleus, and
hippocampus.
 
activation.mgh : activation map in the subcortical areas
mask.mgh: including the thalamus, caudate nucleus, and hippocampus
 
How do I make the activation map in the thalamus, caudate nucleus, and
hippocampus?
Do I use "mri_binarize" or "mri_convert"?
mri_binarize  --i activation.mgh --mask mask.mgh --0 result.mgh
 
Best wishes
Gwang-Won Kim 
 
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