Hi Seonjoo, 

your base command is missing the "-all" so no processing is done in the
base, which is why the file is missing later..

Best, Martin



On Wed, 2019-08-07 at 17:27 +0000, Lee, Seonjoo wrote:
>         External Email - Use Caution        
> Dear Freesurfer,
> Could you help me to resolve this error? I looked up the previous
> postings, but the recommendation (copying files in the same folder
> etc.) did not help.
> Thank you.
>  
>  
> $ recon-all -base template -tp 002_S_0295_S32678 -tp
> 002_S_0295_S567612 -sd $SUBJECTS_DIR
> Subject Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c
> Current Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c
> INFO: SUBJECTS_DIR is /Users/seonjoolee/ADNI_long/tmp
> Actual FREESURFER_HOME /Applications/freesurfer
> Darwin Seonjoos-iMac.nyspi.local 18.5.0 Darwin Kernel Version 18.5.0:
> Mon Mar 11 20:40:32 PDT 2019; root:xnu-4903.251.3~3/RELEASE_X86_64
> x86_64
>  
> Started at Wed Aug 7 10:24:55 EDT 2019 
> Ended   at Wed Aug 7 10:24:56 EDT 2019
> #@#%# recon-all-run-time-hours 0.000
> recon-all -s template finished without error at Wed Aug  7 10:24:56
> EDT 2019
> done
>  
>  
> $ recon-all -long 002_S_0295_S32678 template -all
> ERROR: file /Users/ll/ADNI_long/tmp/template/base-tps does not exist!
>  
>  
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