Can you run the command in the command window that you start freeview?

Ruopeng

> On Sep 16, 2019, at 5:11 PM, Miguel Ángel Rivas Fernández 
> <miguelrivasf...@gmail.com> wrote:
> 
>         External Email - Use Caution        
> 
> 
> Dear Ruopeng, 
> 
> I put that command in the freeview command console and this is the output
> 
> [FreeView] ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
> This is not a shell. Only freeview commands are supported. Type '-h' for all 
> the available commands.
> 
> 
> 
>  Best regards, 
> 
> El lun., 16 sept. 2019 a las 22:58, Ruopeng Wang (<rpw...@nmr.mgh.harvard.edu 
> <mailto:rpw...@nmr.mgh.harvard.edu>>) escribió:
> If you run:
> 
> ls /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
> 
> What does it show? 
> 
> Ruopeng
> 
> On 9/16/19 4:29 PM, Miguel Ángel Rivas Fernández wrote:
>>         External Email - Use Caution        
>> 
>> Dear Freesurfer devs,
>> 
>> I tried to open the brainmask.mgz file in freeview but I obtained this error:
>> 
>> 
>> mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz, -1): could 
>> not open file
>> MRIread failed: Unable to read from 
>> /usr/local/freesurfer/subjects/4227/mri/brainmask.mgz
>> mghRead(/usr/local/freesurfer/subjects/4227/mri/brainmask.mgz, -1): could 
>> not open file
>> 
>> Any suggestion about what could be the problem?, maybe the write permissons 
>> of the freesurfer folder? 
>> 
>> I am using the freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c 
>> version that is installed in a Ubuntu 18.04 virtual machine. It is very 
>> strange because few weeks ago everything it was working correctly. 
>> 
>> Thanks in advance.
>> 
>> 
>> Best regards,
>> -- 
>> Miguel Ángel Rivas Fernández
>> 
>> 
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> -- 
> Miguel Ángel Rivas Fernández
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