oh, sorry, yes it is. The surfaces are placed on the high res volumes, 
but the aseg will be at 1mm. If you need the aseg at highres, then you 
will need to use the -hires flag (but the surfaces will suffer)

On 10/24/19 2:55 PM, Alexopoulos, Dimitrios wrote:
>          External Email - Use Caution
>
> Doug,
>
> I copied over files and ran using the  -conf2hires flag, however, the 
> orig.mgz/brainmask.mgz are resampled to 1mm isotropic not the native 0.8mm.
>
> Using the -hires flag maintains the orig.mgz/brainmask.mgz at native 0.8mm 
> resolution.
>
> Is this expected when running -conf2hires?
>
> Jim
>
> -----Original Message-----
> From: freesurfer-boun...@nmr.mgh.harvard.edu 
> <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Greve, Douglas N.,Ph.D.
> Sent: Tuesday, October 15, 2019 11:54 AM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] recon-all at native resolution
>
> better to use a patch I created for the HCP, see 
> https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/readme
>
>
> On 10/15/19 12:13 PM, Alexopoulos, Dimitrios wrote:
>>          External Email - Use Caution
>>
>> We have data acquired at 0.8mm isotropic and would like to maintain
>> this resolution in the processing stream rather than FS resampling to 1mm.
>>
>> Is the command to do this 'recon-all -hires -all'?
>>
>> Are there any drawback to doing this?
>>
>> Jim
>>
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