On 9/24/22 9:49 AM, glen wrote:
Such efforts seem so inherently metaphorical it's difficult for me to approach a concrete conversation. For example, I have a couple of biologist friends, one meso (bugs) and one macro (ungulates), who thought I was being contrarian when I challenged their assertion that biodiversity in urban areas was *obviously* lower than that of natural areas like forests. Of course, I admit my ignorance up front. Maybe they are. But it's just not obvious to me.

This may seem a little tangential but the realm of Permaculture Design has a suite of truisms on these topics, though they are articulated in their unique language which can be a little hard to translate sometimes.  I think the permaculture community represent a fertile laboratory for doing *some* experiments as implied by Glen's questions.

A good example which gestures toward the Chan work at least morphologically is maybe worth a scan if not a full read here:

   https://aflorestanova.wordpress.com/2016/04/08/zones-in-permaculture-design/

Permaculture's 5 zone quantization doesn't preclude a recognition of there being continuous gradients in many dimensions from a locus of "technological closed-loop" (zone 0) and "biological closed loop" (zone 5).

There is a *lot* of talk in the literature about the interfaces around zone 0, 1, 2 techno-structures creating localized ecozones that harbor diversity (desired and undesired == vermin) which I think provide some good anecdotal evidence about biodiversity in transition zones and acute technological interfaces (e.g. roofs, walls, corners, posts, fences, etc).  Permaculture is a domain of recognizing and exploiting "happy accidents".

It is also worth noting the diversity spike that happens in estuarial contexts...

A more formal study of Urban/Architectural design with an eye to *health* (human-centric view) is the domain of Biophilic Design <https://www.terrapinbrightgreen.com/report/biophilia-healing-environments/>.  Nikos Salingaros is a hard-core Mathematician at UT-San Antonio who addresses abstractions of Complexity <https://en.wikipedia.org/wiki/Nikos_Salingaros#Complexity> and Pattern Languages <https://en.wikipedia.org/wiki/Pattern_language> as well as Architecture and Urbanism.  He also has some interesting opinions <https://en.wikipedia.org/wiki/Nikos_Salingaros#Philosophy> about post modernism as well as Dawkins Atheism.



Since then, they've presented (meso and macro) arguments that justify their position. It does seem obvious that urban areas trend to more adaptable animals like coyotes and raccoons and less so to, say, deer. The bugs are more interesting. Meso guy found some articles that show "species" diversity in urban areas is roughly the same as natural areas. But phylogenetic diversity is clearly lower in urban areas. That seems counter intuitive to me. It's a cool result.

My main point when I originally expressed skepticism, though, was about microbial diversity. Is it possible that bug-layer and microbe-layer (including what lives in/on large animals like rats and humans) diversity makes up for lower diversity in large-layers?

I *feel* that projects like Chan's could help with this question since it seems prohibitively expensive to sample and test enough microbial populations of urban and wild areas, especially if we include intra-animal populations. I'm just not sure *how* they could help.

On 9/24/22 03:38, David Eric Smith wrote:
It’s funny; I know Bert.

One of our colleagues played a role in bringing him out to work at Google in Tokyo.

A mathematician (Will Cavendish) who has part-time support at IAS
https://www.ias.edu/scholars/will-cavendish <https://www.ias.edu/scholars/will-cavendish> is also interested in the mathematical dimensions of this, though I have only a glancing exposure to how those two together are trying to frame the problems.  Because Bert has come at it more from the ALife/engineering approach, and Will’s interests run more in the direction of proving capabilities of broad classes of systems, often interested in their aggregation as categories  (and also about the role of simulation as a replacement for proof in systems that produce complicated enough state spaces), it should be a productive and interesting collaboration.  I don’t know how engaged others are in the Google group on this specific project, because I am too far outside that loop.

Eric

On Sep 23, 2022, at 4:03 PM, Jon Zingale <[email protected] <mailto:[email protected]>> wrote:

https://arxiv.org/pdf/1812.05433.pdf <https://arxiv.org/pdf/1812.05433.pdf>

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