Wow!
 
Thanks to everyone who took the time to reply. I got so many replies I'm afraid I can't thank everyone personally and I haven't had the time to go through and do a comparison on the softwares recommended but as promised, please find a compiled list of what was recommended to me.
 
 
AppScan
Database Scanner by ISS
Scandoo 
@stake webproxy --> for manual trys
AppDetective
WebInspect:
burp proxy at portswigger.net
Spike by Dave Aitel.
 
More people suggested Appscan than any other.
 
A special thanks goes to Bill Pennington for taking the time to write me a relatively detailed explanation of the shortfalls of automated scanners, even before he had fully absorbed his coffee.
 
Again thank to everyone who took the time and when I have decided on which best suits our needs, I will let you know.
 
Dean

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