I think there is some confusion with my use of the word Bootstrap.  When I
mean bootstrap I am talking about the

class Bootstrap extends Zend_Application_Bootstrap_Bootstrap { }

That was not getting run until I manually called $application->bootstrap();
and the bootstrap object was not being injected into the front controller
until i forced it in per Jakes suggestion.

I have the "bootstrap" file that you guys are talking about and it is
essentially the same as the /public/index.php except for the fact that i set
the environment to testing and did not call ->run();

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