Thank you so much for your help. Here is how the local htaccess looks like:

RewriteEngine On
RewriteBase /

RewriteCond %{REQUEST_FILENAME} -s [OR]
RewriteCond %{REQUEST_FILENAME} -l [OR]
RewriteCond %{REQUEST_FILENAME} -d
RewriteRule ^.*$ - [NC,L]
RewriteRule ^.*$ /ocdsb/lisgar/pulic_html/index.php [NC,L]

<ifmodule php5_module>
php_value include_path
"/home/path_to_frame_work/ZendFramework-1.12.0/library/"
</ifmodule>

I have 1 htaccess file per subdomain and if I remove the include from it, it
generates error. Does it mean it processes the htaccess file?
The structure of my project is sth like this:
1 application in the root directory
multiple applications in the subdomain directories.
When you open the website, the root app is used and then by choosing
appropriate link you'll be redirected to any of the subdomains. But when you
click on any of the links in the subdomain(s), you'll be redirected to a
wrong address.

Can you please tell me or give a simple example of what would be a well
structured multi application website?

Could the cause be the default values in bootstrap (empty) and htaccess?

Thanks everyone for your helps.



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