Hej Björn, We have activated all conda parameters in the yml. But when you install a tool the deps are not installed. So every tool is installed with no deps.
Jochen Get BlueMail for Android On Jul 26, 2019, 21:07, at 21:07, "Björn Grüning" <bjoern.gruen...@gmail.com> wrote: >Hi Jochen, > >what is not working? Do you have any error message. > >Ciao, >Bjoern > >Am 25.07.19 um 15:45 schrieb Jochen Bick: >> Hi >> >> we have a new galaxy 19.01 instance and conda is somehow not running >> correctly: >> >> galaxy.yml >> >> #dependency_resolvers_config_file: >config/dependency_resolvers_conf.xml >> conda_prefix: /opt/galaxy/tools/_conda >> #conda_exec: null >> #conda_debug: false >> #conda_ensure_channels: 'iuc,conda-forge,bioconda,defaults' >> #conda_use_local: false >> conda_auto_install: true >> conda_auto_init: true >> conda_copy_dependencies: true >> >> job_working_directory: /opt/galaxy/daten/jobs_directory >> >> any ideas? >> >> Thanks Jochen >> >> >> >> >> -- >> ETH Zurich >> *Jochen Bick* >> Animal Physiology >> Institute of Agricultural Sciences >> Postal address: Universitätstrasse 2 / LFW B 58.1 >> 8092 Zurich, Switzerland >> Office: Eschikon 27 >> 8315 Lindau, Switzerland >> >> Phone +41 52 354 92 06 >> jochen.b...@usys.ethz.ch <mailto:jochen.b...@usys.ethz.ch> >> www.ap.ethz.ch >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> %(web_page_url)s >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/ >> ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
