I am forwarding your question to the Galaxy Dev list, which is the
best place to ask this type of question.

Dave C

On Tue, Dec 28, 2010 at 11:27 PM,  <gilgi.friedlan...@weizmann.ac.il> wrote:
>
> Hi,
>
> I am trying to run locally the fastq_groomer.py
>
> My command:
>
> python /usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py seq.txt 
> illumina seq_out.txt sanger
>
> seq.txt is a fastq file with Illumina qualities.
>
> I get the following error:
>
> Traceback (most recent call last):
> File "/usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py", line 37, 
> in <module>
> if __name__ == "__main__": main()
> File "/usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py", line 10, 
> in main
> force_quality_encoding = sys.argv[5]
> IndexError: list index out of range
>
> Does anyone know what the problem is?
>



-- 
===> PLEASE KEEP RESPONSES ON THE LIST <===
http://gmod.org/wiki/GMOD_Americas_2011
http://gmod.org/wiki/GMOD_News
http://gmod.org/wiki/Help_Desk_Feedback
_______________________________________________
galaxy-dev mailing list
galaxy-dev@lists.bx.psu.edu
http://lists.bx.psu.edu/listinfo/galaxy-dev

Reply via email to