I've got a user request for a converter from bowtie's map output to BED
format, and looking at the provided script it's mostly just an
application of cut(1) and sort(1).

Is this something Galaxy already does through some mechanism we're not
finding or is this 3 line conversion script something I should be
adding and submitting back?

Thanks,

-- 
Ry4an Brase                                         612-626-6575
Software Developer                                  Application Development
University of Minnesota Supercomputing Institute    http://www.msi.umn.edu
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