Hello all,

Below is an announcement that went out to the larger GMOD community about
GMOD related content at Plant and Animal Genome in a week.

Some particular highlights for the Galaxy Community are
* Dan Blankenberg's hour long seminar on Galaxy on Wednesday,
* Anne-Francoise Adam-Blondon's talk on the GnpIS portal
* and the INRA posters on using Galaxy for SNP detection (#188) and using
Galaxy in the GnpIS portal (#805).

See http://gmod.org/wiki/PAG_2011 for details and links.

Also, if you are presenting work that uses Galaxy at PAG (or any other
conference), please feel free to post that to the list as well.

Thanks,

Dave C

---------- Forwarded message ----------
From: Dave Clements <cleme...@nescent.org>
Date: Sat, Jan 8, 2011 at 9:32 PM
Subject: [Gmod-announce] GMOD at PAG 2011, Jan 15-19
To: GMOD Announcements List <gmod-annou...@lists.sourceforge.net>, GMOD
Comparative Genomics and Phylogeny List <gmod-coge...@lists.sourceforge.net>


Hello all,

GMOD will have a stronger presence then ever at the Plant and Animal Genome
Conference (PAG 2011) <http://gmod.org/wiki/PAG_2011>, being held January
15-19 in San Diego. This includes, for the first time, *an all day GMOD
Workshop <http://www.intl-pag.org/19/19-gmod.html>* on Wednesday, January
19th, featuring extended talks on

   - MAKER <http://gmod.org/wiki/MAKER>: An easy to use genome annotation
   pipeline <http://www.intl-pag.org/19/19-gmod.html#MAKER>
   - Galaxy <http://gmod.org/wiki/Galaxy>: Analyze, Visualize,
Communicate<http://www.intl-pag.org/19/19-gmod.html#Galaxy>
   - JBrowse <http://gmod.org/wiki/JBrowse>: A Next Generation Genome
   Browser <http://www.intl-pag.org/19/19-gmod.html#JBrowse>
   - Tripal <http://gmod.org/wiki/Tripal>: A Construction Toolkit for Online
   Genomic Databases <http://www.intl-pag.org/19/19-gmod.html#Tripal>
   - GMODviews <http://gmod.org/wiki/GMODviews>: A web-based knowledge-base
   and user-configurable interface for GMOD databases and tools, including
   Tripal, GBrowse, and Chado
DBs<http://www.intl-pag.org/19/19-gmod.html#GMODviews>
   - GBrowse_syn <http://gmod.org/wiki/GBrowse_syn>: The Generic Synteny
   Browser <http://www.intl-pag.org/19/19-gmod.html#GBrowse_syn>

PAG 2011 <http://gmod.org/wiki/PAG_2011> will also feature workshops and
tutorials covering

   - BioMart <http://gmod.org/wiki/BioMart>: Ensembl and Ensembl
Genomes<http://www.intl-pag.org/19/abstracts/W29_PAGXIX_188.html>
   - GBrowse <http://gmod.org/wiki/GBrowse>: The Generic Genome Browser: A
   Hands on Workshop for Installing, Configuring and Using Your Own
GBrowse<http://www.intl-pag.org/19/19-gbrowse.html>
   - CMap <http://gmod.org/wiki/CMap>: Using Gramene: A Genomics and
   Genetics Resource for Rice and other
Grasses<http://www.intl-pag.org/19/19-gramene.html>

Plus *at least 25 more
talks<http://gmod.org/wiki/PAG_2011#Projects_Using_GMOD_Components>and
posters <http://gmod.org/wiki/PAG_2011#Posters>* about or using Pathway
Tools <http://www.intl-pag.org/19/abstracts/C02_PAGXIX_903.html>,
GBrowse<http://www.intl-pag.org/19/abstracts/P08b_PAGXIX_828.html>,
Galaxy <http://gmod.org/wiki/Galaxy>, CMap <http://gmod.org/wiki/Cmap>,
Apollo <http://gmod.org/wiki/Apollo>, Chado <http://gmod.org/wiki/Chado>,
GBrowse_syn <http://gmod.org/wiki/GBrowse_syn>,
JBrowse<http://gmod.org/wiki/JBrowse>,
BioMart <http://gmod.org/wiki/BioMart>, MAKER <http://gmod.org/wiki/MAKER>,
Tripal <http://gmod.org/wiki/Tripal>, and the GMOD Evo
Hackathon<http://www.intl-pag.org/19/abstracts/P08a_PAGXIX_814.html>.
 See http://gmod.org/wiki/PAG_2011 for a more complete list.

Many GMOD users<http://gmod.org/wiki/PAG_2011#Projects_Using_GMOD_Components>and
GMOD developers, including Stephen
Ficklin <http://gmod.org/wiki/User:Sficklin>
(Tripal<http://gmod.org/wiki/Tripal>),
Carson Holt <http://gmod.org/wiki/User:Carsonholt>
(MAKER<http://gmod.org/wiki/MAKER>),
Barry Moore <http://gmod.org/wiki/User:Bmoore>
(SOBA<http://gmod.org/wiki/SOBA>,
MAKER <http://gmod.org/wiki/MAKER>), Dan
Blankenberg<http://gmod.org/wiki/User:DanB>(
Galaxy <http://gmod.org/wiki/Galaxy>), Mitch
Skinner<http://gmod.org/wiki/User:MitchSkinner>(
JBrowse <http://gmod.org/wiki/JBrowse>), Ken Youens-Clark
(CMap<http://gmod.org/wiki/CMap>),
Mike Caudy <http://gmod.org/wiki/User:Mcaudy>
(GMODviews<http://gmod.org/wiki/GMODviews>),
Rob Buels <http://gmod.org/wiki/User:RobertBuels>
(Bio::Chado::Schema<http://gmod.org/wiki/Bio::Chado::Schema>,
GBrowse_syn <http://gmod.org/wiki/GBrowse_syn>), and Scott
Cain<http://gmod.org/wiki/User:Scott>(
Chado <http://gmod.org/wiki/Chado>, GBrowse <http://gmod.org/wiki/GBrowse>,
...) will be attending PAG this year. Please seek each other out.

Dave Clements <http://gmod.org/wiki/User:Clements>
Galaxy Project <http://gmod.org/wiki/Galaxy>

PS: In addition, three of the GMOD developers (Dan, Mitch, Scott) are
also available
to visit organizations in the San Diego
area<http://gmod.org/wiki/GMOD_News#GMOD_Roadshow_in_San_Diego>during
the meeting.
-- 
http://gmod.org/wiki/GMOD_Americas_2011
http://gmod.org/wiki/GMOD_News
http://usegalaxy.org/


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