Yan Luo wrote:
> Dear Nate,
> 
> Please find the following errors, it is the newest, and our restart is
> stopped. I hope we can get the solution from you as soon as possible.

Hi Yan,

Your last 4 messages included 3 different paths to Galaxy.  It seems as
though there are quite a few copies of Galaxy in use here.

To ensure there are no permissions problems, please do the following,
all as the same non-root user:

1. Remove the ~/.python-eggs directory and all of its contents.
2. Clone a new copy of Galaxy.
3. Start Galaxy using `./run.sh`

And report back any errors which persist.  If the numpy error below
remains, I suggest setting up a Python virtualenv as described on:

  http://usegalaxy.org/production

--nate

> 
> ----------------
> Traceback (most recent call last):
>   File "./scripts/paster.py", line 34, in <module>
>     command.run()
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 84, in run
>     invoke(command, command_name, options, args[1:])
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 123, in invoke
>     exit_code = runner.run(args)
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py",
> line 218, in run
>     result = self.command()
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
> line 276, in command
>     relative_to=base, global_conf=vars)
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py",
> line 313, in loadapp
>     **kw)
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 204, in loadapp
>     return loadobj(APP, uri, name=name, **kw)
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 225, in loadobj
>     return context.create()
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 625, in create
>     return self.object_type.invoke(self)
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
> line 110, in invoke
>     return fix_call(context.object, context.global_conf,
> **context.local_conf)
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/util/fixtypeerror.py",
> line 57, in fix_call
>     val = callable(*args, **kw)
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/lib/galaxy/web/buildapp.py",
> line 90, in app_factory
>     add_controllers( webapp, app )
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/lib/galaxy/web/buildapp.py",
> line 39, in add_controllers
>     module = __import__( module_name )
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/lib/galaxy/web/controllers/tracks.py",
> line 23, in <module>
>     from galaxy.visualization.tracks.data.array_tree import
> ArrayTreeDataProvider
>   File
> "/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/lib/galaxy/visualization/tracks/data/array_tree.py",
> line 8, in <module>
>     from bx.arrays.array_tree import FileArrayTreeDict
>   File "numpy.pxd", line 119, in init bx.arrays.array_tree
> (lib/bx/arrays/array_tree.c:11323)
> ValueError: numpy.dtype does not appear to be the correct type object
> ----------------
> 
> 
> Looking forward to hearing from you.
> 
> Best Wishes,
> 
> Yan
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