Nate Coraor wrote:
> Sonali Amonkar wrote:
> > 
> > I am currently facing another issue. When I run my Workflow, I am seeing 
> > the following  error on the server log. This error is not consistent, and 
> > occurs in an erratic manner. 
> > 
> > galaxy.jobs INFO 2011-02-03 05:17:03,522 job 151 dispatched
> > galaxy.jobs.runners.pbs DEBUG 2011-02-03 05:17:09,755 
> > (150/69156.<primaryserver>) PBS job has left queue
> > galaxy.jobs.runners.pbs DEBUG 2011-02-03 05:17:09,879 (151) submitting file 
> > galaxy-dist/database/pbs/151.sh
> > galaxy.jobs.runners.pbs DEBUG 2011-02-03 05:17:09,880 (151) command is: 
> > java -cp galaxy-dist/tools/my_tools/jars/PreRef1.jar RefFilterModule 
> > galaxy-dist/database/files/000/dataset_192.dat 
> > galaxy-dist/database/files/000/dataset_194.dat  
> > galaxy-dist/database/files/000/dataset_195.dat
> > galaxy.jobs.runners.pbs DEBUG 2011-02-03 05:17:09,880 (151) pbs_submit 
> > failed, PBS error 15031: Protocol (ASN.1) error
> > galaxy.jobs DEBUG 2011-02-03 05:17:13,363 job 150 ended
> > galaxy.jobs ERROR 2011-02-03 05:17:15,816 Unable to cleanup job 152
> 
> Hi Sonali,
> 
> I am pretty sure this problem is somehow specific to the TORQUE setup,
> and I see you also posted this to the torquedev list, but unfortunately
> received no response.
> 
> I am not sure what is up here, but you may want to try adjusting the
> 'tcp_timeout' server setting. (qmgr -c 'set server tcp_timeout = X')

Also, you may want to see if PBS is making an attempt to queue this job
on a particular node, and if so, check the mom_logs for that node.

> 
> --nate
> 
> > 
> > Any help/pointer would be appreciated for this issue. Thank you very much 
> > for your time Nate.
> > 
> > Regards,
> > Sonali
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