Yan Luo wrote:
> Dear Nate,
> 
> Yes, you are right, for some reason, we couldn't cd to the folder. It is
> fixed and I restart the Galaxy. The only thing is that it needs about 10
> minutes to start. I remembered it is a little fast last week. Is there any
> problem? Anyway, Galaxy works.

Assuming nothing else has changed, it sounds like your NFS server is
having some performance problems.

--nate

> 
> Thanks,
> 
> Yan
> 
> On Mon, Feb 14, 2011 at 8:49 AM, Nate Coraor <n...@bx.psu.edu> wrote:
> 
> > Yan Luo wrote:
> > > Dear Nate,
> > >
> > > Thanks for your quick response, I got "sever error". and just killed the
> > > process. When I ran activate as follows and can't active it:
> > >
> > >
> > > kangtu@dscbc-compute:~$ .
> > > /home/kangtu/data/tools/galaxy-dist/galaxy_env/bin/activate
> > > bash: /home/kangtu/data/tools/galaxy-dist/galaxy_env/bin/activate: Stale
> > NFS
> > > file handle
> > > kangtu@dscbc-compute:~$
> >
> > It looks like the NFS mount on which Galaxy lives has gone bad, possibly
> > due to an error with the NFS server.  I suggest contacting a local
> > system administrator for assistance.
> >
> > --nate
> >
> > >
> > >
> > > Any suggestion will be appreciate.
> > >
> > > Best Wishes,
> > >
> > > Yan
> > >
> > >
> > >
> > > On Mon, Feb 14, 2011 at 8:43 AM, Nate Coraor <n...@bx.psu.edu> wrote:
> > >
> > > > Yan Luo wrote:
> > > > > Dear Nate,
> > > > >
> > > > > I have a new problem, last week, I restarted the Galaxy, but it
> > worked
> > > > well.
> > > > > This morning, I found I can't start it from browser, but when I check
> > "ps
> > > > > auxwww|grep python", I still find it is running, what is problem?
> > > >
> > > > What happens when you try to connect via a browser?  Is an error
> > message
> > > > displayed?  Connection timeout?
> > > >
> > > > >
> > > > > kangtu   24468  0.3  0.0 961592 104296 pts/30  Sl+  Feb11  13:43
> > python
> > > > > ./scripts/paster.py serve universe_wsgi.ini
> > > >
> > > > If you reconnect to your screen session and take a look at the output
> > > > from the Galaxy server, there may be error message displayed which
> > would
> > > > explain what the problem is.
> > > >
> > > > --nate
> > > >
> > > > >
> > > > >
> > > > > Looking forward to hearing from you.
> > > > >
> > > > > Best Wishes,
> > > > >
> > > > > yan
> > > > >
> > > > > On Fri, Feb 11, 2011 at 11:16 AM, Yan Luo <luoma...@gmail.com>
> > wrote:
> > > > >
> > > > > > Dear Nate,
> > > > > >
> > > > > > I just used "screen", and restarted the galaxy, it works. It is
> > > > perfect,
> > > > > > and I also found that some features can't be used before, when I
> > > > restart it,
> > > > > > everything is fine.
> > > > > >
> > > > > > Have a wonderful weekend!
> > > > > >
> > > > > > Best Wishes,
> > > > > >
> > > > > > Yan
> > > > > >
> > > > > >
> > > > > >
> > > >
> >
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