Marina Gourtovaia wrote:
> Hi
> 
> In a bash shell, I define the path (needed both by Galaxy to find
> the right version of python and by tools that run on a cluster to
> find the executables) and some other  global variables on the
> command line. The cluster jobs (LSF) inherit all these values. This
> is my line
> 
>  
> DRMAA_LIBRARY_PATH=/usr/local/lsf/7.0/linux2.6-glibc2.3-x86_64/lib/libdrmaa.so.1.0.4
>  PATH=/usr/bin:/software/solexa/bin:$PATH  http_proxy="http://somecache:3128"; 
> sh run.sh
> 
> Is there anything inherently wrong with this simple solution?

No, this is effectively what we do to start the server.  The only
difference is that when using PBS the environment is not passed through
to the cluster.  Is that a feature specific to LSF?

--nate

> 
> Marina
> 
> 
> 
> 
> -- 
> The Wellcome Trust Sanger Institute is operated by Genome Research
> Limited, a charity registered in England with number 1021457 and a
> company registered in England with number 2742969, whose registered
> office is 215 Euston Road, London, NW1 2BE.
> _______________________________________________
> To manage your subscriptions to this and other Galaxy lists, please use the 
> interface at:
> 
>  http://lists.bx.psu.edu/
_______________________________________________
To manage your subscriptions to this and other Galaxy lists, please use the 
interface at:

  http://lists.bx.psu.edu/

Reply via email to