Moving this to the galaxy-dev mailing list since it's about a local Galaxy installation.
The error here is likely a misconfigured tool_data_table_conf.xml. The format of this file has changed, see the tool_data_table_conf.xml.sample for an example of the new structure. Let me know if your file looks correct with the new format and you're still having issues. -Dannon On Feb 23, 2011, at 2:24 PM, Sonali Thakur wrote: > Hello, > > We are getting below error with the Map with Bowtie for Illumina tool. > Please suggest. > > Traceback (most recent call last): > File "/var/www/galaxy/lib/galaxy/jobs/runners/local.py", line 55, in run_job > job_wrapper.prepare() > File "/var/www/galaxy/lib/galaxy/jobs/__init__.py", line 347, in prepare > self.command_line = self.tool.build_command_line( param_dict ) > File "/var/www/galaxy/lib/galaxy/tools/__init__.py", line 1515, in > build_command_line > command_line = fill_template( self.command, context=param_dict ) > File "/var/www/galaxy/lib/galaxy/util/template.py", line 9, in fill_template > return str( Template( source=template_text, searchList=[context] ) ) > File > "/var/www/galaxy/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs4.egg/Cheetah/Template.py", > line 1004, in __str__ > return getattr(self, mainMethName)() > File "DynamicallyCompiledCheetahTemplate.py", line 222, in respond > IndexError: list index out of range > > Thanks > _______________________________________________ > The Galaxy User list should be used for the discussion > of Galaxy analysis and other features on the public > server at usegalaxy.org. For discussion of local Galaxy > instances and the Galaxy source code, please use the > Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other > Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ _______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
