Davide, see bx.bbi.bigwig_file.BigWigFile
Implemented in Cython, there is also some BigBed support with a common
class (bbi_file) for the indexing and aggregation pieces.
This is currently read only. Also, not tested exhaustively on
different types of bigwig, but I believe we have most cases correct.
Input is welcome!
On Mar 7, 2011, at 5:14 PM, Davide Cittaro wrote:
Probably this is not the best place to ask about bx-python, but
since most of
bx developers are galaxy developers, it may be worth trying...
I just want to know the status of bigwig support in bx. I need to
bigwig as input data and I previously wrapped kent binaries with
subprocess. I wanted to make it more pythonic and started reading
If bx already has support for an iterator similar to
bx.wiggle.Reader (I need
to transfer all the chromosome in another data structure) I won't
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