On Thu, Mar 17, 2011 at 7:47 PM, Nate Coraor <n...@bx.psu.edu> wrote: > Peter Cock wrote: >> >> $ python -ES ./scripts/fetch_eggs.py >> Fetched http://eggs.g2.bx.psu.edu/Mako/Mako-0.2.5-py2.6.egg >> ... >> Fetched http://eggs.g2.bx.psu.edu/PasteScript/PasteScript-1.7.3-py2.6.egg > > Were there really no eggs, or did you remove your eggs directory prior > to running this fetch?
I can't tell you if there were no eggs (I'm fairly sure there were some), but I hadn't removed any deliberately. Might that have happened via hg update clean? >> >> $ python -ES ./scripts/manage_db.py upgrade >> 75 -> 76... >> >> This migration script fixes the data corruption caused in the form_values >> table (content json field) by migrate script 65. >> >> No corrupted rows found. >> done >> >> >> Job done - thanks! This also worked on the old install I had stuck on DB >> version 73. Does this help explain what the root cause of the problem is? > > Depending on the answer to the above question, it means there is > probably (still) a bug in the egg conflict/resolve code somewhere. I will be in touch if this happens again (and it probably will next time the database schema is updated), but if you want I could try and reproduce it by doing a clean checkout of an old revision, running galaxy, then try to update it to the current code. Regards, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/