On 3/17/11 3:40 PM, Jeremy Goecks wrote:
Hi all - I'm running Galaxy on my Redhat linux cluster. When I run
cufflinks from the shell I get the error/warning:
cufflinks: /usr/lib64/libz.so.1: no version information available
(required by cufflinks)
but it still seems to run ok. It looks like Galaxy is choking on
this. I tried compling cufflinks manually but that was more
troublesome. Is there a way I can get Galaxy to ignore this error
There's currently no way to tell Galaxy to ignore some error messages
and not others; we're working on this functionality but it's far from
being done*. Unfortunately, your best bet is to compile Cufflinks on
your system. FYI, here's a technical description of this problem:
*To detect particular errors, we envision XML elements in a tool's
output definition that use regular expressions to identify errors
amongst a program's output. We think this is the right approach, but we
haven't started implementing it yet. You are welcome to do so; we
welcome code contributions from the community.
ok - I managed to compile cufflinks myself. When I run it I get a line
of output that reads "linked against Boost version 104601". When I run
cufflinks in Galaxy, Galaxy complains about this line being an error.
Hmmm. How is cufflinks running in the public version of galaxy?
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