Thanks for an answer and for moving it to the proper mailing list.

There were a few issues with postgres 9 that were fixed in changeset 5074,
> what revision is your galaxy instance running?

I am still running the stable version (galaxy-dist branch). I guess that
with this version I need to stick with the older postgres 8.x. And I will
try now, separately, to use the development version (galaxy-central branch).

>  If you are running something newer than that, could you explain more
> explicitly the steps to reproduce the server error?

Even though perhaps there is no need to investigate further - all I need is
to use the fixes introduced in 5074 - but still I am attaching the error I
got. Mainly because it is only my guess that the error was caused by the new
postgres (because it does not occur when I switch back to sqlite).


line 143 in __call__
  app_iter = self.application(environ, start_response)
line 98 in __call__
File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.5.egg/paste/',
line 539 in intercept_output
  app_iter = application(environ, replacement_start_response)
File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.5.egg/paste/',
line 80 in __call__
  return self.application(environ, start_response)
line 632 in __call__
  return self.application(environ, start_response)
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/', line 145
in __call__
  body = method( trans, **kwargs )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/controllers/',
line 68 in index
  template, vars = tool.handle_input( trans, params.__dict__ )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/', line 933 in
  _, out_data = self.execute( trans, incoming=params )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/', line 1225 in
  return self.tool_action.execute( self, trans, incoming=incoming,
set_output_hid=set_output_hid, history=history, **kwargs )
File '/home/galaxy/galaxy-dist/lib/galaxy/tools/actions/', line
288 in execute
  data.dbkey = str(input_dbkey)
File '/home/galaxy/galaxy-dist/lib/galaxy/model/', line 656 in
  self.metadata.dbkey = [value]
File '/home/galaxy/galaxy-dist/lib/galaxy/datatypes/', line 85 in
  self.parent._metadata[name] = self.spec[name].unwrap( value )
TypeError: 'NoneType' object does not support item assignment

Martin Senger
skype: martinsenger
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

Reply via email to