All is clear now. Thanks for the info! :)
> the job should copy its output files into the Galaxy database/files directory
> before it terminates. So assuming you are not using data staging and the
> database directory is shared via NFS, then the next tool will read the files
> from this location. There is an option to stage files if you use TORQUE, but
> I think most sites use the network shared storage approach.
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