Hi Peter,

I don't see your attempt to use default in the example given. A bit more detail?

-K

On Wed, Mar 30, 2011 at 12:32 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> Hi all,
>
> I'm trying to write a new tool working with tabular data (specifically
> a Reciprocal Best Hits (RBH) tool using BLAST style tabular output).
>
> I want the user to be able to choose a column number (from one of the
> input files), but I have a default column in mind. However, Galaxy
> doesn't seem to obey the default column number:
>
>    <inputs>
>        <param name="a_vs_b" type="data" format="tabular" label="Hits
> from querying A against B" description="Tabular file, e.g. BLAST
> output" />
>        <param name="b_vs_a" type="data" format="tabular" label="Hits
> from querying B against A" description="Tabular file, e.g. BLAST
> output" />
>        <param name="id1" type="data_column" data_ref="a_vs_b"
> multiple="False" numerical="False" value="1" label="Column containing
> query ID" help="This is column 1 in standard BLAST tabular output" />
>        <param name="id2" type="data_column" data_ref="a_vs_b"
> multiple="False" numerical="False" value="2" label="Column containing
> match ID" help="This is column 2 in standard BLAST tabular output"/>
>        <param name="score" type="data_column" data_ref="a_vs_b"
> multiple="False" numerical="False" value="12" label="Column containing
> containing score to rank on" help="The bitscore is column 12 in
> standard BLAST tabular output"/>
>    </inputs>
>
> I've tried giving the default column value numerically (as shown), and
> also using value="c2" etc. Regardless, Galaxy just defaults to the
> first column.
>
> Is this a bug, or am I doing something wrong?
>
> Thanks,
>
> Peter
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