We are getting multiple requests for this but did not have the bandwidth to do it. So if you are planning to implement - share through the toolshed and we will roll it to main.
The way I got round this was let the SRA website do the conversion. So just paste in the URL in the upload screen: http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=dload&run_list=SRRXXXXXX&format=fastq Where SRRXXXXXX is the archive of interest, and it downloads Sanger FASTQ sequences to Galaxy. Regards, Steve ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/