On Fri, Apr 1, 2011 at 12:01 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Thu, Mar 31, 2011 at 6:28 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
>> Hi all,
>> The NCBI have just released BLAST 2.2.25+ which includes some
>> interesting new stuff of interest to the tabular output, ...
> One reason why I want to move to BLAST 2.2.25+ on our local
> machine is they fixed the subject IDs in tabular output, ...

Hi Kanwei,

Could you transplant or merge this commit please?

It updates the test output files to work with BLAST 2.2.25+, which I
will be using locally due to several important bug fixes. As you don't
offer BLAST+ on the Penn State server I don't expect this to cause
you any problems.

Also (and unrelated to this change), do you see this from the test suite?

$ ./run_functional_tests.sh -id ncbi_blastp_wrapper
ERROR: NCBI BLAST+ blastp ( ncbi_blastp_wrapper ) > Test-1
Traceback (most recent call last):
line 155, in test_tool
    self.do_it( td )
line 71, in do_it
    page_inputs =
self.__expand_grouping(testdef.tool.inputs_by_page[0], all_inputs)
line 122, in __expand_grouping
    elif isinstance(declared_inputs[value.name], str):
KeyError: 'blast_type'


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