In my local instance of Galaxy, I'm trying to download the BAM and BAI file from the tool SAM-to-BAM. I see the links for downloading the Dataset and bam_index.

BTW - I'm running Safari on Mac OS X.

When I download the Dataset, I get the BAM file. When I download the bam_index, it gets renamed to Galaxy13-[SAM-to-BAM_on...].bam_index.html

The error is the extension, .bam_index.html. This should be .bam.bai. The BAM file gets saved correctly with .bam.

I check the sam-to-bam XML wrapper but can't determine where this filename comes from or how to fix it. Has anyone else run into this?


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