I 
Running run.sh as root helped me  get rid of the permission denied errors.

After modifying the apache and galaxy config files, restart the apache web 
server then run the run.sh as root 
$ sudo su root
$ source  galaxy_env/bin/activate
$ sh galaxy_dist/run.sh

Hope this helps

Lucie
-----------------------------------------------------------
Lucie Hutchins
Scientific Software Engineer
The Jackson Laboratory
Email: lucie.hutch...@jax.og
web: harlequin.jax.org
Phone: 1-207-288-6764
________________________________________
From: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu] 
On Behalf Of Yu Wang [yu.w...@wzw.tum.de]
Sent: Tuesday, April 12, 2011 4:13 PM
To: di...@immunbio.mpg.de
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Apache configuration problem?

hi, sarah, sorry for the confusion. I did change those lines with my own
directories. And the files are readable for others.

Regards,
Yu

Yu Wang

Office:
Department of Plant Science
Center for Life and Food Sciences Weihenstephan
Technical University Munich

Lehrstuhl für Pflanzenzüchtung
Wissenschaftszentrum Weihenstephan für Ernährung,
Landnutzung und Umwelt
Technische Universität München

Room 026, Emil-Ramann-Str. 4 (old: Am Hochanger 4)
Tel: ++49 8161 71-4139

Lab:
Lehrstuhl für Genomorientierte Bioinformatik
Maximus-von-Imhof-Forum 3.
Room  OG-L 09
Tel: ++49 8161 71-2132

yu.w...@wzw.tum.de
D-85354 Freising
Germany
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