Hi all,

I just wanted to mention (to avoid duplicate work) that I have a working
Galaxy wrapper for NLStradamus v1.6, a tool for prediction of nuclear
localization signals (NLSs) from a protein FASTA file. The wrapper
does a little reformatting of the output to get a clean tabular file for use
in Galaxy.

I would release this to the Galaxy Tool Shed now, but the tool's author
Alex Nguyen Ba tells me he hopes to have an update released fairly
soon which should include a native tabular output - probably with a
richer column structure. So rather than having to change the tool
output and potentially break workflows, I plan to wait till then.

However, if anyone wants the wrapper before then, drop me an email.




A. N. Nguyen Ba, A. Pogoutse, N. Provart, A. M. Moses. NLStradamus:
a simple Hidden Markov Model for nuclear localization signal prediction.
BMC Bioinformatics. 2009 Jun 29;10(1):202.

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