Hi all, I just wanted to mention (to avoid duplicate work) that I have a working Galaxy wrapper for NLStradamus v1.6, a tool for prediction of nuclear localization signals (NLSs) from a protein FASTA file. The wrapper does a little reformatting of the output to get a clean tabular file for use in Galaxy.
I would release this to the Galaxy Tool Shed now, but the tool's author Alex Nguyen Ba tells me he hopes to have an update released fairly soon which should include a native tabular output - probably with a richer column structure. So rather than having to change the tool output and potentially break workflows, I plan to wait till then. However, if anyone wants the wrapper before then, drop me an email. Regards, Peter References: A. N. Nguyen Ba, A. Pogoutse, N. Provart, A. M. Moses. NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinformatics. 2009 Jun 29;10(1):202. http://www.moseslab.csb.utoronto.ca/NLStradamus ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/